Last updated: 2024-12-12

Checks: 2 0

Knit directory: zinck-website/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version d4297f5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    analysis/.DS_Store

Untracked files:
    Untracked:  analysis/IBD.html

Unstaged changes:
    Modified:   .gitignore
    Modified:   analysis/CRC.Rmd
    Deleted:    analysis/CRC.html
    Modified:   analysis/Heatmaps.Rmd
    Modified:   analysis/IBD.Rmd
    Modified:   analysis/_site.yml
    Modified:   analysis/index.Rmd
    Modified:   analysis/simulation.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html ab6400d Patron 2024-06-18 Build and publish the website
Rmd a6c38f8 Patron 2024-06-18 Add home, experiment, and simulation pages
Rmd 6e66a4e Patron 2024-06-17 Initial commit of Workflowr project

zinck is a novel knockoff-based framework specifically designed for microbiome data analysis. Microbiome datasets are often high-dimensional, compositional, and zero-inflated, posing unique challenges for statistical analysis and interpretation. zinck addresses these challenges by employing a flexible generative model that effectively captures the zero-inflation and complex dependence structure characteristic of microbial communities. This approach allows for simultaneous variable selection and false discovery rate (FDR) control, making zinck particularly suited for taxonomic variable selection in microbiome studies.